Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015832836.1_cds_XP_016505034.1_18411
CDS Infomation

[gene=LOC107822963] [db_xref=GeneID:107822963] [protein=2-isopropylmalate synthase A isoform X2] [protein_id=XP_016505034.1] [location=complement(join(72207..72336,73027..73172,73702..73836,73942..74025,74187..74261,74338..74371,74890..74990,79422..79508,79604..79696,82277..82357,82438..82651,84572..85218))] [gbkey=CDS]
Sequence

ATGTCTTCTCTCCGTTCAAACTCTGCAACTACTCTCAGCTCTAATATTTCCTTCCAATCC
AAAAATCCTCTTTTTCACACCATCTTTACCTTCTTTCCTTCAATCAAAACACACTCTTAT
TCCCCATATACAGTTATCCGGTGCTCAATTCAAAAGCGACCTGAATATATACCGAGTAAA
ATCTCCAACCACAAATACGTACGTATTTTCGACACGACTCTCCGCGATGGAGAGCAATCC
CCGGGTGCTACGATGACTACGAAAGAAAAATTAGATGTTGCCCGTCAATTAGCGAAACTC
GGAGTTGACATAATCGAAGCTGGGTTTCCAGCATCATCTGAAGCTGATTTTGAAGCTGTG
AGATTAATAGCAGAGGAAATTGGTAATAATAATAGCGACGGTGATTATGTGCCGGTGATT
TGTGGATTATCGAGGTGTAATAAGAGGGATATTGATAAAGCGTGGGAAGCTGTGAAGTGT
GCGAAGAGACCTAGGGTTCATACGTTTATAGCGACGAGTGAGATACATATGAAGTATAAG
TTGAAGATGAGTAAAGAAGAAGTAGTGGAGAAAGCGCGGAGTATGGTTGCTTATGCGAGG
AGCTTGGGATGTGAGGATGTTGAATTTAGCCCTGAAGATGCTGGAAGGTCTGAGCGTGAG
TTCCTTTACCATATCCTTGGAGAAGTTATCAAAGCTGGCGCAACAACCCTTAACATACCT
GATACTGTTGGATACACTGTACCCACTGAATTTGGACAGTTAATTGCTGATATAAAAGCC
AATACCCCAGGAATTGAAAATGTGATCATTTCTACACACTGCCAGAATGATCTTGGACTT
TCTACGGCCAACACTTTAGCTGGAGCTTGTGCAGGGGCAAGACAAGTAGAAGTGACCATC
AATGGCATTGGTGAAAGAGCTGGAAATGCTTCGCTGGAGGAGGTTGTAATGGCCTTAAAA
TGTCGCGGAGAGAAAGTATTAGGTGGCCTCTACACGGGCATTAATACTCAACACATTATC
CCGACGAGCAAAATGGTAGAGGAGTACACTGGGCTTCAAGTGCAGCCACATAAGGCCATT
GTTGGAGCTAATGCATTTGCTCATGAAAGTGGCATCCATCAGGATGGAATGTTAAAACAC
AAAGATACATATGAGATTATATCTCCTGAAGATATTGGGCTTAGTCGTGCTAATGAAGCC
GGTATTGTCCTTGGGAAGCTCAGTGGGCGCCATGCATTGAAATCCAAAATGCTTGAGCTT
GGATATGACATTGAGGGAAAAGAACTGGAGGACCTCTTCTGGCGATTTAAGTCGGTGGCT
GAGAAGAAAAAGAAAATTACAGATGATGACATAATAGCACTGATGTCAGATGAAGTTTTC
CAGCCTCAAGTTGTTTGGCAACTTGCAGATGTACAGATTGCCTGTGGAAGTCTTGGCCTC
TCTACAGCAACTGTTAAGCTTATTGACAGTGATGGTCAAGAGCATGTTGCTTGTTCTGTT
GGAACCGGACCAGTTGATGCAGCTTATAAGGCAGTTGACCTCATTGTAAAGGTACCTATA
ACACTCCTCGAGTATTCCATGAATGCAGTCACAGAAGGTATAGATGCCATAGCCTCAACC
AGAGTATTAATCCGCGGGGAGGATGACCATGCTATAACCAATGGTTCAATTGGACCGACT
CATCACCGTATATTTAGTGGAACTGGAGCTGATATGGACGTTGTCATCTCTAGTGTCCGA
GCCTATATTGGTGCATTGAACAAAATGTTGAGTTTCGGGAAGCTGGTTTCGAGGTACAAG
AAGCCTGAAGGTAGTGTGGTAGTATAA

Peptide Sequence

PEP ID

XP_016505034.1
PEP Infomation

PREDICTED: 2-isopropylmalate synthase A isoform X2 [Nicotiana tabacum]
Sequence

MSSLRSNSATTLSSNISFQSKNPLFHTIFTFFPSIKTHSYSPYTVIRCSIQKRPEYIPSK
ISNHKYVRIFDTTLRDGEQSPGATMTTKEKLDVARQLAKLGVDIIEAGFPASSEADFEAV
RLIAEEIGNNNSDGDYVPVICGLSRCNKRDIDKAWEAVKCAKRPRVHTFIATSEIHMKYK
LKMSKEEVVEKARSMVAYARSLGCEDVEFSPEDAGRSEREFLYHILGEVIKAGATTLNIP
DTVGYTVPTEFGQLIADIKANTPGIENVIISTHCQNDLGLSTANTLAGACAGARQVEVTI
NGIGERAGNASLEEVVMALKCRGEKVLGGLYTGINTQHIIPTSKMVEEYTGLQVQPHKAI
VGANAFAHESGIHQDGMLKHKDTYEIISPEDIGLSRANEAGIVLGKLSGRHALKSKMLEL
GYDIEGKELEDLFWRFKSVAEKKKKITDDDIIALMSDEVFQPQVVWQLADVQIACGSLGL
STATVKLIDSDGQEHVACSVGTGPVDAAYKAVDLIVKVPITLLEYSMNAVTEGIDAIAST
RVLIRGEDDHAITNGSIGPTHHRIFSGTGADMDVVISSVRAYIGALNKMLSFGKLVSRYK
KPEGSVVV

Transcript Sequence

Gene sequence data has not been registered.